Sequencing data DQ. Causes and consequences

Identify key areas of concern when performing QC on sequencing data, understadn the next steps after performing QC on sequencing data and appreciate the need to assess pre-existing QC on public datasets.

  • 00:00 Learning objectives
  • 00:24 Why do we need to QC raw sequencing data?
  • 00:40 Scale of the problem
  • 01:21 Standard tools for QC
  • 01:39 FASTQ format
  • 02:04 FastQC output
  • 03:06 Always perform QC on data new to you
  • 03:24 Acknowledgements